# TIME 46 37 16 18 3 112 3 108 1
get_slice.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz img ../legacy//slice_V.conf
cp img_V_4500_5500.fits NGC2916.V.fits
clean_nan.pl  NGC2916.V.fits -1
./radial_sum_cube_e.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz 2.5 34.8804679120806 33.5990231931904 rad.NGC2916.rss.fits 2
./img2spec_e.pl rad.NGC2916.rss.fits 0 NGC2916.spec_5.txt
./img2spec_e.pl rad.NGC2916.rss.fits 5 NGC2916.spec_30.txt
read_img_header.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz MED_VEL > SYS_VEL_NOW
auto_ssp_elines_several_Av_log_new.pl  NGC2916.spec_5.txt /disk-b/sanchez/ppak/legacy/miles_12.fits auto_ssp.NGC2916.cen.out ../legacy//mask_elines.txt ../legacy/auto_ssp_V500_several.config 2 -3 50 3800 6800 ../legacy//emission_lines.txt  0.0124609539043173 0.000100069228559446 0.0114602616187229 0.0134616461899118 4.5 0.5 1.2 9.0 0.01 0.3 0.0 2.1
auto_ssp_elines_several_Av_log_new.pl  NGC2916.spec_30.txt /disk-b/sanchez/ppak/legacy/miles_12.fits auto_ssp.NGC2916.int.out ../legacy//mask_elines.txt ../legacy/auto_ssp_V500_several.config 2 -3 150 3800 6800 ../legacy//emission_lines.txt  0.0124609539043173 0.000100069228559446 0.0114602616187229 0.0134616461899118 4.5 0.5 1.2 9.0 0.01 0.3 0.0 2.1
cont_seg_all.pl NGC2916.V.fits 0.02 7 0.8 0.005 cont_seg.NGC2916.fits DMASK.NGC2916.fits
spec_extract_cube_mean.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz cont_seg.NGC2916.fits CS.NGC2916.RSS.fits
spec_extract_cube_error.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz cont_seg.NGC2916.fits e_CS.NGC2916.RSS.fits
rss_seg2cube.pl CS.NGC2916.RSS.fits cont_seg.NGC2916.fits SEG.cube.fits
get_slice.pl SEG.cube.fits SEG_img ../legacy//slice_V.conf
cp SEG_img_V_4500_5500.fits SEG.V.fits
clean_nan.pl  SEG.V.fits -1
imarith.pl NGC2916.V.fits '/' SEG.V.fits scale.seg.fits
rm -f elines_auto_ssp.CS.NGC2916.rss.out
auto_ssp_elines_several_Av_log_rss_new_error.pl  CS.NGC2916.RSS.fits /disk-b/sanchez/ppak/legacy/miles_12.fits auto_ssp.CS.NGC2916.rss.out ../legacy//mask_elines.txt ../legacy/auto_ssp_V500_several.config 0 -2 5 3850 6800 ../legacy//emission_lines.txt  0.0124609539043173 0.000100069228559446 0.0114602616187229 0.0134616461899118 4.5 0.5 1.2 9.0 0.3 0.3 0.0 2.1
get_index_output_auto_ssp_elines_several_Av_log_rss_outFIT3D.pl output.auto_ssp.CS.NGC2916.rss.out.rss.fits 5 auto_ssp.CS.NGC2916.rss.out /null > indices.CS.NGC2916.rss.out &
plot_output_auto_ssp_elines_several_Av_log_rss_all.pl output.auto_ssp.CS.NGC2916.rss.out.rss.fits plot_fit.CS.NGC2916.ps/CPS &
./index_seg_cube.pl indices.CS.NGC2916.rss.out cont_seg.NGC2916.fits indices.CS.NGC2916.cube.fits &
map_auto_ssp.seg.pl elines_auto_ssp.CS.NGC2916.rss.out cont_seg.NGC2916.fits map.CS.NGC2916 &
FIT3D_output_rss_seg2cube.pl output.auto_ssp.CS.NGC2916.rss.out.rss.fits 1 cont_seg.NGC2916.fits SSP_mod.cube.fits
imarith.pl SSP_mod.cube.fits '*' scale.seg.fits SSP_mod.NGC2916.cube.fits
imarith.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz '-' SSP_mod.NGC2916.cube.fits TMP.NGC2916.cube.fits
rm -r test.cube.fits
smooth_spec_clip_cube.pl TMP.NGC2916.cube.fits test.cube.fits 75 1.5 10 1860
imarith.pl TMP.NGC2916.cube.fits - test.cube.fits GAS.NGC2916.cube.fits
vel_eline_cube.pl GAS.NGC2916.cube.fits 1 0.95 ve.NGC2916 6562.68 /null 6587.89002971996 6701.02447621761
./kin_back_cube_guided_error.pl  GAS.NGC2916.cube.fits /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz tmp.conf none 0 6530 6810 KIN.GAS.6530_6810.NGC2916.out /null  ve.NGC2916.vel_map.fits ve.NGC2916.mask_map.fits 1 > junk.fit.log 
mapgrid_back_rot.pl 78 73 KIN.GAS.6530_6810.NGC2916.out map.6530_6810.NGC2916 1 > junk.fit.log
rm -f vel.fits
rm -f disp.fits
med2df.pl map.6530_6810.NGC2916_vel_00.fits vel.fits 3 3
med2df.pl map.6530_6810.NGC2916_disp_00.fits disp.fits 4 4
./kin_back_cube_fixed_error.pl  GAS.NGC2916.cube.fits /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz tmp.conf none 0 6700 6950 KIN.GAS.6700_6950.NGC2916.out /null  vel.fits disp.fits 1 > junk.fit.log 
mapgrid_back_rot.pl 78 73 KIN.GAS.6700_6950.NGC2916.out map.6700_6950.NGC2916 1 > junk.fit.log
./kin_back_cube_fixed_error.pl  GAS.NGC2916.cube.fits /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz tmp.conf none 0 4800 5200 KIN.GAS.4800_5200.NGC2916.out /null  vel.fits disp.fits 1 > junk.fit.log 
mapgrid_back_rot.pl 78 73 KIN.GAS.4800_5200.NGC2916.out map.4800_5200.NGC2916 1 > junk.fit.log
./kin_back_cube_fixed_error.pl  GAS.NGC2916.cube.fits /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz tmp.conf none 0 4310 4500 KIN.GAS.4310_4500.NGC2916.out /null  vel.fits disp.fits 1 > junk.fit.log 
mapgrid_back_rot.pl 78 73 KIN.GAS.4310_4500.NGC2916.out map.4310_4500.NGC2916 1 > junk.fit.log
./kin_back_cube_fixed_error.pl  GAS.NGC2916.cube.fits /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz tmp.conf none 0 4095 4250 KIN.GAS.4095_4250.NGC2916.out /null  vel.fits disp.fits 1 > junk.fit.log 
mapgrid_back_rot.pl 78 73 KIN.GAS.4095_4250.NGC2916.out map.4095_4250.NGC2916 1 > junk.fit.log
./kin_back_cube_fixed_error.pl  GAS.NGC2916.cube.fits /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz tmp.conf none 0 3700 3900 KIN.GAS.3700_3900.NGC2916.out /null  vel.fits disp.fits 1 > junk.fit.log 
mapgrid_back_rot.pl 78 73 KIN.GAS.3700_3900.NGC2916.out map.3700_3900.NGC2916 1 > junk.fit.log
get_Ha.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz 0.0124609539043173 map_Ha.NGC2916.fits
HII_recover.pl map_Ha.NGC2916.fits 0.4 3.5 0.1 0.1  seg_Ha.NGC2916.fits mask_Ha.NGC2916.fits > HII_recover.NGC2916.log
./plot_seg_map.py NGC2916
spec_extract_cube.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz seg_Ha.NGC2916.fits HII.NGC2916.rss.fits
spec_extract_cube_error.pl /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz seg_Ha.NGC2916.fits e_HII.NGC2916.rss.fits
spec_extract_diffuse.pl  /disk-a/sanchez/ppak/legacy/DATA/V500/reduced_v1.3c//NGC2916.V500.rscube.fits.gz  map_Ha.NGC2916.fits diffuse.fits diff.NGC2916.rss.fits 0.01
cp seg.diffuse.fits seg_diff.NGC2916.fits
rm -f elines_auto_ssp.HII.NGC2916.rss.out
auto_ssp_elines_several_Av_log_rss_new_error.pl  HII.NGC2916.rss.fits /disk-b/sanchez/ppak/legacy/miles_2.fits auto_ssp.HII.NGC2916.rss.out ../legacy//mask_elines.txt ../legacy/auto_ssp_V500_several.config 0 -2 5 3850 6800 ../legacy//emission_lines.txt  0.0124609539043173 0.000100069228559446 0.0114602616187229 0.0134616461899118 4.5 0.5 1.2 9.0 0.3 0.3 0.0 2.1
plot_output_auto_ssp_elines_several_Av_log_rss_all.pl output.auto_ssp.HII.NGC2916.rss.out.rss.fits plot_fit.HII.NGC2916.ps/CPS 
get_index_output_auto_ssp_elines_several_Av_log_rss_outFIT3D.pl output.auto_ssp.HII.NGC2916.rss.out.rss.fits 5 auto_ssp.HII.NGC2916.rss.out /null > indices.HII.NGC2916.rss.out
gzip -f *.fits
# TIME 50 18 21 18 3 112 3 108 1
